chr29_12

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.4

E-value:

0.002

From sequence:

542232

To sequence:

542066

Alignments:

                                          v   v          v      vv                                                NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<..-<<<<<-<---<<_____________..............._____________~~~~~~ CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG..aGCAuGaGAUGGaGCUaucAAcaAau...............ugUGAgAaaaaga*[15]* 88    
                 AA  G + AU AGA++GAGA AG:G   A :CAG  +G : :A AUGGAG     AA AAA                     +AAAAA+A      
    chr29 542232 AAGGGAAAAUCAGAGAGAGAGAGAGAG-AGACAGggUGUGUAACAUGGAGUGUAGAAAAAAAaggggaagcuuuaaa-----AAAAAAAA*[36]* 542113
                 ***********************9965.5555553355555588888888888887777777777777776543322.....22222222...7.. PP

                 vv      v           v   v                           NC
                 >>---->>>>>>.-..>>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     89 uCcCuCCCaUGC.A..CUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                        : : C    CUG: U   C:CU GCUC +U +U+ +CUC  U+U
    chr29 542112 ---UCUGUUCGCcUcuCUGUAU-UCCUCUCGCUCUCUCUUUCUCUCGAUAU 542066
                 ...4445555542311555555.4599************************ PP

>>

RNAfold
>chr29_12
UAUCGAGAGAAAGAGAGAGCGAGAGGAAUACAGAGAGGCGAACAGAUGAA
GGAAACAGAAGGCACCAGACAUAGCAUAAUUUUUUUUUUUUUUAAAGCUU
CCCCUUUUUUUUCUACACUCCAUGUUACACACCCUGUCUCUCUCUCUCUC
UCUCUGAUUUUCCCUU
.(((((((((.((((((((.((.(((.....(((((((.(((....(((((((((.(((((((..........))....))))).)))))))))....))).))))))).....(((.....))).......))).)).)))))))).)))))).)))........ (-41.10)

Length sequence

: 166

Length match:

165