chr29_13

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.0

E-value:

0.0051

From sequence:

742704

To sequence:

742569

Alignments:

                                          v   v v                                                                 NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________~~~~~~>>---->>>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauU*[ 8]*uCcCuCCCaU 98    
                  AU   U + GAGA++GAGA AG:G : A           AGAU GA CUAU  A+A AU    A A +++  UG  + U      UCCCUCC   
    chr29 742704 UAUAUAUAUAGAGAGAGAGAGAGAGAUAAAU---------AGAUAGAUCUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGU*[24]*UCCCUCC--- 742603
                 *************************999975.........6***************776666555555555555555555...9..9998998... PP

                      v v   v                            NC
                 >>->>>>>>->>>>>>>->>>:.:::::::::::::::: CS
  RF00690     99 GCACUGCcUCuUCCCuGGCUCC.uuucuCuccucuuUuu 136   
                      G  UC: C:CU GCUCC  U+CU U +++U+U  
    chr29 742602 -----GACUCUACUCUCGCUCCuAUGCUGUGACUUCUGA 742569
                 .....368**************8889999999******* PP

>>

RNAfold
>chr29_13
CAGAAGUCACAGCAUAGGAGCGAGAGUAGAGUCGGAGGGAAGAGAGAAGU
GUGGCUAUACAUACACACACACACACAUAUAUAUAUAUAUAUAUAGAUCU
AUCUAUUUAUCUCUCUCUCUCUCUCUAUAUAUAUA
......((...((......))..))((((((..(((((((.((((((.(((((..........)))))........((((((....))))))(((((....)))))...)))))))))))))))))))....... (-32.10)

Length sequence

: 135

Length match:

134