chr29_17

cmsearch-Rfam

Family :

sR45

Id:

RF01274

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Archaea;

Ontology:

GO:0006396 RNA processingRF01274

Description:

not description

Score:

27.4

E-value:

0.0035

From sequence:

75959

To sequence:

76034

Alignments:

                                v             v              NC
                :::::<<--<<<<<-<<<<<~~~~~~->>>>>>>>>>-->>::: CS
  RF01274     1 aGggAUgAuGAaGCCGAGGA*[17]*aUCUUCGCuUCGCcGAcc 55   
                  G A:GA GAAGCCG GGA      +UCU CGCUUCGCC:A  
    chr29 75959 GAGAAUGACGAAGCCGAGGA*[38]*CUCUCCGCUUCGCCAAGG 76034
                ********************...9..7***************** PP

RNAfold
>chr29_17
AGAAUGACGAAGCCGAGGACCCAGUUGCCAAUGAAGCCCAUGAUAAUGUC
GGAGAAGCUCUCCGCUUCGCCAAGG
....((.(((((....((...((........))...))(((....))).((((((...))))))))))).))... (-15.10)

Length sequence

: 75

Length match:

74