chr29_2

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

21.5

E-value:

0.0041

From sequence:

282724

To sequence:

282873

Alignments:

                              vvvvv v                     v          v                    v vvvvv                 NC
                 (((((((((,,<<<<<<<-<<<-----<<<--<<<..-<<<<<<~~~~~~>>>>->>->>>->>>------>>>->>>>>>>,,,,<<________ CS
  RF02400    220 GaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaG..uguguga*[16]*ucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCU 323   
                 GAGA:: :GG G:       :C C U G:GGAG:G   G:G G:      :C C+:C C:C C:C  C CCG:   C  +:CAC CACU CCCC U
    chr29 282724 GAGAGGGGGGAGU------CGCACAUAGAGGAGGGaaCGAGGGU*[26]*ACGCAUCUCCCUCUCACCGCCGCUGCCGCAACACGCACUGCCCCUU 282833
                 ***********97......5556889********9776766665...9..56666777888888888888766545577899**********9999 PP

                                                           NC
                 __________________>>,,,,,,,,,,,,))))))))) CS
  RF02400    324 CCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuuCuC 364   
                  CCC   C   CUC C CGU + +C+CU UC C: ::UCUC
    chr29 282834 UCCCGGUCUCCCUCUC-CGUCUAUCUCUUUCCCCUCCUCUC 282873
                 9999877766666555.5*********************** PP

>>

RNAfold
>chr29_2
CGCGACCAAGUGCGCAGACCAUCCCCAUCAUACUGUUUCCUUCCACAGCG
GUGUCUGUGCAAAUGCGUGCGUUGCACAGACUGUCACGCAGCAUUCAACU
UUGUGGUAAGUAAAACGAACAGAGCAAGAGAAGAGUGGAAAAAGUGGUGG
GUGUGAAGAGAGAGGGGGGAGUCGCACAUAGAGGAGGGAACGAGGGUAGA
ACGGUGGCAAAAGGCUGAAAAAUACGCAUCUCCCUCUCACCGCCGCUGCC
GCAACACGCACUGCCCCUUUCCCGGUCUCCCUCUCCGUCUAUCUCUUUCC
CCUCCUCUCUCUUUUCUGUGGUUAUUAUUUCUCACGAGUCAUACGCAGAG
AGGUGCGCAUGUAUUCAAAUGUUACACUUUCCCAUCCCCUGUAGGUCGCC
GGCACCGUACGUCUCUGUACUUUCACUAUGCGCGUACCAAAGCACGAGUG
UACGCCCGCCCCCGCCCCU
.((((((...(((((((((............((((((.........)))))))))))))))(((((.(((((.(((.....))).))))))))))..((((.((((.(((((((((..((((((.((((((.(((.((..((((.((((((((......((((((((((................(((((.(.((((((..((((((((...((((((..................)))..)))..))))))....))..))))))).)))))..)))))))))))))))))).))))..))..))))))))))))))).))).)))))).))))))))........((((((((.((((........))))))).)))))............)))))).(((..((((((.(((.((.((((.((.......))...)))).)))))))))))...)))......... (-147.60)

Length sequence

: 469

Length match:

148