chr29_3

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

30.9

E-value:

2.2e-05

From sequence:

1130731

To sequence:

1130587

Alignments:

                                                         v         v                            NC
                  ((((((((-((((((-((((-(((((,<<____>>,,,,<<-~~~~~~>>,)))))-))))-))))))-)))))))) CS
  RF01390     120 gaGGcGGCUgccGCgccggcuGCcGcugcAcuugcuGaCGcu*[24]*gCugCgGCugccgacGCggcUGCCgCCuc 214    
                  :AG:CGGC G:C:C: C:GCUGC:GCUGC   UGC G   :       :C GC:GC GC:G :G:G:CUGCCG:CU:
    chr29 1130731 UAGACGGCAGGCACUGCUGCUGCUGCUGCUGCUGCCG---UG*[77]*GCAGCAGCGGCAGCAGUGCCUGCCGUCUA 1130587
                  *****************************76555555...43...9..89*************************** PP

>>

RNAfold
>chr29_3
ACGAAGGAGUACAUUCUCCGACUCAAAUAUAUUAUUGAGGGUAUCCGCCA
GACUACUGUAGACGUCUAGACGGCAGGCACUGCUGCCGCUGCUGCUGCGC
CCGAUAUGCCAUCAGUGCUGGAGGCAAAAGCAACCACAGCACCGCGCAAG
GAUGAGGUCGACAAGGACCACGCACGGCAGCAGCAGCAGCAGCAGCAGUG
CCUGCCGUCUAUUUGAUAUCGCCCCGCUCCUACAUGGGCGCGUCCAUUAC
UAAAAAAAGGGCGACGUGCCGUGUCGGU
.(((.((((......))))..(((((........)))))(((....))).(((..........)))((((((((((((((((((((.(((((((((((..(((...(((...(.((((((...((....)).....)))))).).))).......((((......)))).....)))..))))))))))).)))))))))))))))))))).......))).......((.((((((((((((((.............))))).))).)))))).)). (-127.10)

Length sequence

: 278

Length match:

143