chr29_4

cmsearch-Rfam

Family :

MIR1122

Id:

RF00906

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00906

Description:

not description

Score:

43.0

E-value:

3.6e-06

From sequence:

159742

To sequence:

159837

Alignments:

                                 v             v vv                                      vvv             v        NC
                 ::::<<<<<<<<<<<<<<<<<<<<<<<<<<<.<<-----------------~~~~~~--------------->>>>>>>>>>>>>>>>>>>>>>>> CS
  RF00906      1 uaaaUACUCCCUCCGUCCggaAaugcuUGUc.uuaaAuuUGuauAaAuauG*[37]*uaUUUAuaCAaaUuuaagACAagcauUuccGGACGGAGG 126   
                  A  :A U CC:C:G: C::: AUG::UGU   UA AU+UGUAUA A+AU       UAUUUA++CA+  +U   ACA::CAU :::G :C:G:GG
    chr29 159742 CACCCAGUUCCCCUGCACCCUUAUGUAUGUGuGUAUAUAUGUAUAUAAAUA*[ 0]*UAUUUAGUCAUGACU---ACAUACAUAAGGGGGCAGGGG 159828
                 ******************************424455555665555555544......678888888877666...********************* PP

                           NC
                 >>>>>:::: CS
  RF00906    127 GAGUAuauu 135   
                  A U:  U 
    chr29 159829 GACUGGGUG 159837
                 ********* PP

>>

RNAfold
>chr29_4
CUUCGCCUCACUGCUCCAUCACCCAGUUCCCCUGCACCCUUAUGUAUGUG
UGUAUAUAUGUAUAUAAAUAUAUUUAGUCAUGACUACAUACAUAAGGGGG
CAGGGGGACUGGGUGAUGGGGAGAAAACGACCACG
..(((.....((.((((((((((((((((((((((.((((((((((((((((..((.((((((....)))))).))..)))....))))))))))))).))))))))))))))))))))))))....)))..... (-74.80)

Length sequence

: 135

Length match:

94