chr29_5

cmsearch-Rfam

Family :

MIR1122

Id:

RF00906

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00906

Description:

not description

Score:

41.7

E-value:

7.8e-06

From sequence:

159837

To sequence:

159742

Alignments:

                                 v             vvv                                    vv v             v          NC
                 ::::<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------~~~~~~------------->>.>>>>>>>>>>>>>>>>>>>>>>>> CS
  RF00906      1 uaaaUACUCCCUCCGUCCggaAaugcuUGUcuuaaAuuUGuauAaAuauG*[39]*UUUAuaCAaaUuuaa.gACAagcauUuccGGACGGAGGGA 128   
                  A  :A U:CC:C:G: C::: AUG::UGU   A+  +UG +UAAAUAU       U UAUACA+AU UA   ACA::CAU :::G :C:G:GG:A
    chr29 159837 CACCCAGUCCCCCUGCCCCCUUAUGUAUGU---AGUCAUGACUAAAUAUA*[ 2]*UAUAUACAUAUAUACaCACAUACAUAAGGGUGCAGGGGAA 159749
                 *****************************9...55578999999999998...5..566777777777754159********************** PP

                         NC
                 >>>:::: CS
  RF00906    129 GUAuauu 135   
                  U:  U 
    chr29 159748 CUGGGUG 159742
                 ******* PP

>>

RNAfold
>chr29_5
CUUCGCCUCACUGCUCCAUCACCCAGUUCCCCUGCACCCUUAUGUAUGUG
UGUAUAUAUGUAUAUAAAUAUAUUUAGUCAUGACUACAUACAUAAGGGGG
CAGGGGGACUGGGUGAUGGGGAGAAAACGACCACG
..(((.....((.((((((((((((((((((((((.((((((((((((((((..((.((((((....)))))).))..)))....))))))))))))).))))))))))))))))))))))))....)))..... (-74.80)

Length sequence

: 135

Length match:

94