chr29_7

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

32.9

E-value:

0.0017

From sequence:

227764

To sequence:

227897

Alignments:

                          v    vv                     v  v                            v  v                    vv  NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<<-~~~~~~>>>-->>>>>>>>>>>->>>>>>>>>>.-->>>->>>- CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACaUg*[67]*AuGCCuCCCAUuCCuAucguUCucagg.ugCUCCuuCC 156   
                 G +AG  AG :GA   A  AGA:G :::G:GA:::+  GG   GGG:A ::+      ::  C:CCC   CC  U:::UC:C::: U+:UCCU  C
    chr29 227764 GGAAGAGAGAGGAGAGA--AGAGGAGAGGGGAGGCAGGGGAGGGGGGAGGCA*[32]*GCUACCCCCCUCCCACUGCCUCCCCUCuUAUUCCUGCC 227883
                 *************8666..58888899*********9888888888886665...8..6677888888888889*********994469******* PP

                    v           NC
                 >>>>>::::::::: CS
  RF01911    157 ucuuCCUUuuaguU 170   
                 UC: CCU U A   
    chr29 227884 UCCGCCUCUGAAGA 227897
                 ************** PP

>>

RNAfold
>chr29_7
UCUGCGAAAGGGCCGAAGGAAGAGAGAGGAGAGAAGAGGAGAGGGGAGGC
AGGGGAGGGGGGAGGCACACGCAUGCACACCCACGCCCCUCACAGUGCGG
CUACCCCCCUCCCACUGCCUCCCCUCUUAUUCCUGCCUCCGCCUCUGAAG
AUACAUUUUAUGCGAUUGG
..((((.((((.........((((.(.((((..(.((.((((((((((((((((((((((((.(((...(((((((........))........)))))))).)))))))))).))))))))))))))..)).)..)))).))))).........)))).))))..... (-80.80)

Length sequence

: 169

Length match:

132