chr2_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

22.2

E-value:

0.0025

From sequence:

191362

To sequence:

191552

Alignments:

                              v    v       v            v                        v            v       v           NC
                 ((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<-~~~~~~>>>>->>->>>->>>------>>>->>>>>>>,,,,<<___ CS
  RF02400    214 gGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaC*[15]*ucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUCacuaC 318   
                 :G  UG:::A:GG G  G       G : CGU G G AG G G:::GA       UC::U:C C C C C+UCC C: CC     +C C CA:+  
     chr2 191362 AGGAUGAGAAGGGUGUGG-------GAGGCGUGGGGAAGAGGGGAGGAG*[60]*UCCUUCCUCACACUCCUCCUCCCCC-----UCCCACAGAUA 191499
                 ***************865.......444477889999999999998885...9..6777777777777777776663333.....24455677665 PP

                                                        v                NC
                 _____________________.__>>,,,,,,,,,,,,)))))))))-))--))- CS
  RF02400    319 CCCCUCCCCUUCCCUUCUCCc.CcguacccccCuCUCUCuCuuuCuCGCaucCuC 372   
                 CCC  CC CU CC  UCUC C C :U C+CC+ UC CUC CU:U:::GCA  C:C
     chr2 191500 CCCUCCCUCU-CC-GUCUCUCgCUCUCCUCCUAUCGCUCUCUUUUCUGCAAGCUC 191552
                 5544444443.33.334443336689999999*********************** PP

>>

RNAfold
>chr2_1
GUGGAAACGAGGAACGAGAAGGGCCAUGUGAAGGACAGCGCGCAGUAACU
CACGCACAGAGACGCUCGAGUCCAGCGAUGCGAACGCAGAGCAGAAUAGA
GAGGAAAGCAAAUGCACAACGGUAGUGAGAGAGGAAGGAAGGAUGAGAAG
GGUGUGGGAGGCGUGGGGAAGAGGGGAGGAGUGAUGUCACUGUGAUGGUG
CACAUCCAGCGCGCGGGCACAGAGACACGGCUGUGCGUCUGUCCUUCCUC
ACACUCCUCCUCCCCCUCCCACAGAUACCCUCCCUCUCCGUCUCUCGCUC
UCCUCCUAUCGCUCUCUUUUCUGCAAGCUCAUCAAAGGCCAAAACACUUC
ACGGGGUAGCGCGUAUGGUGAGGGCAUGCCGUAAAGAAUCUCUCGUUGGG
CGGUGCGCAGGCUCUCCCAUGUGGUGUGUGGGGGAGAGAGAGAGAGAGAG
CGGCAGAUAGAGGGAGGGCA
((((....((((...(((.((((...((((((((((((((((((((..(((((((......((((((..((((.((..(((....)))..))......................(((.......))).............)))).....)))))).....))))))).................((((.(((((.(.((((.(.....).)))).).))))).))))..)))))))).)))))))...))))).)))).)))..)))))))).....((((((((((..((((.((((((((.((...((.((((((((((((((.(((.......))).....((((.((.((((.(((((((((.(((((((.((..........))))))).....)).))))))..))).)))).)).)))))))))))))))))).)))))))))))).)))))))))))))).. (-180.30)

Length sequence

: 470

Length match:

189