chr2_13

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.5

E-value:

0.0037

From sequence:

189245

To sequence:

189401

Alignments:

                                        v             v v                                                 v v     NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_____________________________~~~~~~>>---->>>>>>-> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGg*[12]*uCcCuCCCaUGCAC 102   
                 AA+  G+G  GA A G:AG  :G GA: ::GC: AG  : +G  GG:G    + A++A+++G GAGA+AA+GA G       :C+CUCC :  CA 
     chr2 189245 AAAAAGAGGCGAAAAGAAG-GGGGGAGAGAGCGGAGGAGGGG-GGGGGGGCGUGAUGAGGGGAGAGAGAAGGAGGC*[35]*CCUCUCCGCCCCAU 189367
                 *******************.6777**********99999844.444444455678899999999999888877654...9..99999998889*** PP

                          v                         NC
                 >>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690    103 UGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 :GC:: :UC C: GCU: +UU+  U+CUC  UUU
     chr2 189368 CGCUCGCUCGCUCGCUUUCUUUGGUUCUCGGUUU 189401
                 ********************************** PP

>>

RNAfold
>chr2_13
AAAAGAGGCGAAAAGAAGGGGGGAGAGAGCGGAGGAGGGGGGGGGGGCGU
GAUGAGGGGAGAGAGAAGGAGGCGAGAUGUAUUUUCCCCUCCCUCUCGCC
UCUCACAUCCUCUCCGCCCCAUCGCUCGCUCGCUCGCUUUCUUUGGUUCU
CGGUUU
....((((...((((((((((((((.((((((.((.((.((((((((.((((.((((.(((((....(((((.((((.....)))).)))))))))).)))))))).)))))))).)))).)))))).))).))).))))))))...))))..... (-87.10)

Length sequence

: 156

Length match:

155