chr2_14

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

27.0

E-value:

0.0012

From sequence:

202839

To sequence:

202710

Alignments:

                                         v                                                         v              NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---...<<____~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUG...GaGCUa*[37]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuuc 124   
                 +A  G     GAGA+G:AG  : G  :G GG :GAG  :G+GA G   G:G         :CC  CCC:  C C: CC C:  C : GCU:C+U +
     chr2 202839 GAGAGAGAGAGAGAGGAAGUGGGGCGGGGGGGGGAGGGAGGGAGGgagGGGAAG*[28]*CCCUCCCCUUCCUCCUCCUCCUCCUCCGCUUCCUCU 202722
                 ********************9999999999999999999978776332333333...5..455578899*************************** PP

                              NC
                 :::::::::::: CS
  RF00690    125 uCuccucuuUuu 136   
                 + U++++U+ ++
     chr2 202721 CGUUUCUUCAAC 202710
                 ************ PP

>>

RNAfold
>chr2_14
GCGUUGAAGAAACGAGAGGAAGCGGAGGAGGAGGAGGAGGAAGGGGAGGG
GGACAUGCGCCUGAGCCUCCUUCGCUCUCUUCCCCUCCCUCCCUCCCUCC
CCCCCCCGCCCCACUUCCUCUCUCUCUCUCUCUCU
.......(((...((((((((((((.((.((.((((((((..(((((((((((...(((...(((....))))))....))))))))))).))).))))).)))))))).....))))))))..)))........ (-63.00)

Length sequence

: 135

Length match:

128