chr2_15

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

30.5

E-value:

0.00011

From sequence:

218939

To sequence:

218836

Alignments:

                                             v       v                          v       v                         NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>:.:::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGa*[41]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCC.uuucuCuccu 130   
                 ++   GUG  +AGA   A:A ::GGA:G GG  GAG A::  A  G:      :C  +C ::U CAC  CC C:UCC:: G:U   UUU+U+U+ U
     chr2 218939 GGCAAGUGGAAAGAAUGAAAGGAGGAGGAGGAGGAGAAGA-CAGAGG*[10]*UCA-ACGCCUCCACUUCCCCCUCCUUCGUUUUuUUUUUUUUGU 218842
                 ************************************9999.555433...6..555.6679**********************997888899999* PP

                        NC
                 :::::: CS
  RF00690    131 cuuUuu 136   
                 + UU U
     chr2 218841 UGUUGU 218836
                 ****** PP

>>

RNAfold
>chr2_15
UCCGCGGCACAGAGGACAACAACAAAAAAAAAAAAACGAAGGAGGGGGAA
GUGGAGGCGUUGAGCUCAGCCCCCCUCUGUCUUCUCCUCCUCCUCCUCCU
UUCAUUCUUUCCACUUGCCCUCUUCUUGGGAGUCA
(((..((...(((((.(((..................((((((((((((...(((((.(..((...(((.......)))))..).)))))))))))))))))............))).))))).))..))).... (-38.90)

Length sequence

: 135

Length match:

102