chr2_2

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

21.2

E-value:

0.0052

From sequence:

142244

To sequence:

142022

Alignments:

                                                                                                                  NC
                 ((--(((((((((((,,<<<<<<<-<<<-----<<<--~~~~~~->>>------>>>->>>>>>>,,,,<<________________________. CS
  RF02400    214 gGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGA*[37]*CCGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCc. 339   
                 :G G:GG:GA::G:G UG:::: :AG:      GC  A        GCU CCCC :CC: ::::C    A:     CCUC C   C CUU  CC  
     chr2 142244 AGGGAGGGGAGGGGGAUGAAGGGCAGGGAAAAGGCGUA*[97]*GUGCUGCCCCUCCCGUUCUUCUGAGAACGUGUCCUCGCACGCUCUUUCCCUc 142058
                 **********************************9966...8..389************************9999999998888887777655552 PP

                                                      NC
                 ..__>>,,,,,,,,,,,,)))))))))-))--))-- CS
  RF02400    340 ..CcguacccccCuCUCUCuCuuuCuCGCaucCuCU 373   
                   CC:U C+CC+CUC C C:C::UC:C C: +C:CU
     chr2 142057 cuCCUUCCUCCUCUCGCCCCCCCUCUCUCUCUCUCU 142022
                 2366******************************** PP

>>

RNAfold
>chr2_2
UGUGUGUGUGUGUGAGUGUGUGAGUGUAUCCACAGCGCUCAGUUAAGUGU
UCUCAUCGGGUAGCUUCUGAGCUUGACGGUGUGAGAGCGCGAAAUAAGCU
ACUAUGCAGACGGAGAGAGCCAGAGAGAGAGAGAGAGGGGGGGCGAGAGG
AGGAAGGAGGAGGGAAAGAGCGUGCGAGGACACGUUCUCAGAAGAACGGG
AGGGGCAGCACGUGCGUGCUUGUAAUGACCUCACUGAAGAAGAGAGCGGG
CGGGGCUUGCAAAGCGAGCAAACAAAAGGCGCACACACCGCAUUCAACAC
GCUUCACGUACGCCUUUUCCCUGCCCUUCAUCCCCCUCCCCUCCCUCCCC
CCGCGCUGCACGCUGUAGUCCACACUCAGGCUGCGCAGCAGGGGGAGGAG
GAAGGGCUACGUCAGUUCCCCUUUUCUCUCCCCUCGUUGCUGACGCCAGU
CCGGUCGCCCCCUGCGUUCC
..((((((.(((((((((((((........)))).)))))).....((((((((((((...((((....))))...))..)))))))))).........)))))))))(((((.(..(((..(((.(.((((((((((((((((((((((.(((.(((((((((((((.(((((((......((((((....)))))).((((.(((((((....)))).))).....))))..(((((..(((.(((((((..((((((...))))))..........))).....)))).)))......)))))))))))).))))))))..))))).))).))))((((.(((((((((..(((((.((((..(((....)))..))).).)))))..)))).))))).)))).....)).)))))))))))))))).))))...)))..).)).))).((.(((.....)))..)) (-195.00)

Length sequence

: 470

Length match:

221