chr2_3

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.3

E-value:

0.0099

From sequence:

202721

To sequence:

202841

Alignments:

                       v        v                v                                v                v              NC
                 (((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<----<~~~~~>-->>>>->>->>>->>>------>>>->>>>>>>,,,,<<___ CS
  RF02400    220 GaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAu*[8]*aCCucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUCacuaC 318   
                 GAGA:G AG  G:::AG AG::     G:GGA+:G G: :G   CA       CC C:  :C C:  C:CUUCCCC::CC C :::C CUC     
     chr2 202721 GAGAGGAAGCGGAGGAGGAGGA----GGAGGAAGGGGAGGGGGACAU*[8]*GCCUCCU-UCGCU--CUCUUCCCCUCCCUC-CCUCCCUC----- 202806
                 9999999999888888887754....344444333333333333333..3..3333333.33332..333333333222222.22222221..... PP

                                                        v        NC
                 _______________________>>,,,,,,,,,,,,)))))))))  CS
  RF02400    319 CCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuuCuC  365   
                       CCC       C CCCC    ++CC+CUCUCUCU U:UCUC 
     chr2 202807 ------CCCCC---CCCGCCCCA--CUUCCUCUCUCUCUCUCUCUC  202842
                 ......11111...111222222..666778888888999999999  PP

RNAfold
>chr2_3
CUCCCCUCAUGACGAGUGUGCGACGCCACUACCACCACCAAUCAGUGCGU
GUUAGUGUGUGCCCGUGCGUAUGCGUAUGGUCUCUACGUUGUAGCAGCAG
CAGCAGCAGCAGCAGCAGUGGCGCUUAUCGAGAGAGAAAAACAAAAAGCA
AACAACGCAGCGCGUUGAAGAAACGAGAGGAAGCGGAGGAGGAGGAGGAG
GAAGGGGAGGGGGACAUGCGCCUGAGCCUCCUUCGCUCUCUUCCCCUCCC
UCCCUCCCUCCCCCCCCCGCCCCACUUCCUCUCUCUCUCUCUCUCUGCGG
CUGCAUGCUGAGAUGUGUGUUUGGCUGUUGAUCUGGGGAGUAAGAGGGGU
GGGGGUGGAAUUUCCUCGUGGGCCUGAAGAGAGGAGCAGACGAAGAGCGA
GAGCAGCGGACGCUACUGCCGUCACAGCACGCGUGGUGCCGCUAGCUCUG
UGGGACCGUACUUGAUCACG
((((.(((.(.(.(.((.(((((((((((((.((((((......))).))).))))).))).(((((((....)))))))(((((.((....(((.((.((.((.((....)).)).)).)))))...))))))).................((((((...)))))).........((((.((.((((((((.(((((((..((.((((((((.((......))..)))))))).)))))))))))).))))))).)))).((((((((((((......(((..((((((...((.((((((((((((......))))))..)))))).))...))))))..))))))))))))).)).......))))).)))).).))).))))..((..(((.(((((((((((((.((((((.((.((......))))))))))))))).))))).......))).)))..))... (-194.00)

Length sequence

: 470

Length match:

119