chr2_4

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

23.7

E-value:

0.00083

From sequence:

202837

To sequence:

202675

Alignments:

                                                                                                                  NC
                 (((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<----<<<~~~~~~>>>-->>>>->>->>>->>>------>>>->>>>>>>,,,, CS
  RF02400    220 GaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAugc*[ 4]*gcaCCucacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUC 313   
                 GAGA::GA   :::AAG  G :C G  G GG GAG  :G:GA   A:G:      :C:CCUC:C : CCUC C C+UCC C: CC CUU::: CUC
     chr2 202837 GAGAGAGAGAGAGGAAGUGGGGCGGGGGGGG-GAGGGAGGGAGGGAGGG*[30]*CCCCCUCCCCUUCCUC-CUCCUCCUCCUCCGCUUCCU-CUC 202721
                 **********999999998888888877777.55556666665556555...9..5566666666665555.88888888888989999996.788 PP

                                                                      NC
                 <<__________________________>>,,,,,,,,,,,,)))))))))- CS
  RF02400    314 acuaCCCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuuCuCG 365   
                 : U C  C  C C  U C UU U      :   + + U U U UC::UCUCG
     chr2 202720 GUUUCUUCAACGCGCUGCGUUGUUU---GC---UUUUUGUUUUUCUCUCUCG 202675
                 8888888877777766666665543...33...336677899********** PP

>>

RNAfold
>chr2_4
GAUAUCACCGUCCACCCUCCCCUUUCUCCCCUCAUGACGAGUGUGCGACG
CCACUACCACCACCAAUCAGUGCGUGUUAGUGUGUGCCCGUGCGUAUGCG
UAUGGUCUCUACGUUGUAGCAGCAGCAGCAGCAGCAGCAGCAGUGGCGCU
UAUCGAGAGAGAAAAACAAAAAGCAAACAACGCAGCGCGUUGAAGAAACG
AGAGGAAGCGGAGGAGGAGGAGGAGGAAGGGGAGGGGGACAUGCGCCUGA
GCCUCCUUCGCUCUCUUCCCCUCCCUCCCUCCCUCCCCCCCCCGCCCCAC
UUCCUCUCUCUCUCUCUCUCUGCGGCUGCAUGCUGAGAUGUGUGUUUGGC
UGUUGAUCUGGGGAGUAAGAGGGGUGGGGGUGGAAUUUCCUCGUGGGCCU
GAAGAGAGGAGCAGACGAAGAGCGAGAGCAGCGGACGCUACUGCCGUCAC
AGCACGCGUGGUGCCGCUAG
..........(((((((((((((((((((((.(((.....))).((.((((.((((.((((((......))).))).))))))))))(((((((....)))))))...((((...))))((((((((((((((.((((((((((.(((......((((((((...............((((((...)))))).(((...((((((((((((.((.((.((((((((..(((((((((((...(((...(((....))))))....))))))))))).))).))))).)))))))).....))))))))))).))))))))))).))))).)))))...))).))))..)))))))....))))))...)))))).))))))))).((((.((.((..(((......)))..)))).)))).((....))(((((.((((((.((.((......))))))))))))))).. (-203.00)

Length sequence

: 470

Length match:

161