chr2_7

cmsearch-Rfam

Family :

mir-1280

Id:

RF02013

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF02013

Description:

not description

Score:

38.5

E-value:

0.0006

From sequence:

257116

To sequence:

256993

Alignments:

                        v                                                                               v         NC
                 ::<<<<<<<<<-<-<<<<---<<<--<<<<<<<<-<<<-<--<<<<_~~~~~~>>->>-->->>>->>>>>>>>-->>>>>>>>>>>>>>>>>::: CS
  RF02013      1 ucuGucccaccGcUGccacccuccccccuGccucAGuGUGccaGGcA*[ 3]*gCACucACUCaCAgaggCaggcUggauggCgggugggaCaAcA 93    
                  C: :CC :C: C :C :CCC:C:  ::UG::U: GUGU:  :GG A       C C:C : CACA:A::CA::  :G:: G:G:G: GG: :   
     chr2 257116 CCCUCCCCCCUACCCCUCCCCCCUGUUGUGGGUGUGUGUAGACGGGA*[33]*UCUCGCCUACACACACCCACAAGAGGGGGGGAGGAGGGGGGGC 256994
                 ********************************************975...*..699**************************************** PP

                   NC
                 : CS
  RF02013     94 G 94    
                 G
     chr2 256993 G 256993
                 * PP

>>

RNAfold
>chr2_7
GCCCCCCCUCCUCCCCCCCUCUUGUGGGUGUGUGUAGGCGAGAGGGGAGG
GCGAAGGAAUGUGUUCGAUGCUCGCCUCCCGUCUACACACACCCACAACA
GGGGGGAGGGGUAGGGGGGAGGG
.(((((((((((((((((((.(((((((((((((((((((.((((.(((.(((((........)))).).))).)))).))))))))))))))))))).))))))).)))).))))))).).. (-95.80)

Length sequence

: 123

Length match:

122