chr2_9

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

32.9

E-value:

0.0017

From sequence:

202843

To sequence:

202708

Alignments:

                            v                v         v                                          v         v     NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<<-<-<<<~~~~~~>>>>->>>-->>>>>>>>>>>->>>>>>>>>>- CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACaUggAGGA*[57]*UCCcgAuGCCuCCCAUuCCuAucguUCucaggu 147   
                    AG  A A: :AGA:AG :AG  : :  G:G:G   GG:A G ::  A GGAGG        CCC  U CC:: C U:C   UC:U:C  : : 
     chr2 202843 CAGAGAGAGAGAGAGAGAGGAAGUGGGGCGGGGGG---GGGAGGGAGGGAGGGAGGG*[29]*UCCCCCUCCCCUUCCUCC---UCCUCCUCCUCC 202731
                 *******************9999876555555544...4555555555566788876...8..466666665555555555...455555555668 PP

                           v             NC
                 ->>>->>>->>>>>::::::::: CS
  RF01911    148 gCUCCuuCCucuuCCUUuuaguU 170   
                 GCU:C:UC : :U CUU +A   
     chr2 202730 GCUUCCUCUCGUUUCUUCAACGC 202708
                 89999****************** PP

>>

RNAfold
>chr2_9
AAGCAAACAACGCAGCGCGUUGAAGAAACGAGAGGAAGCGGAGGAGGAGG
AGGAGGAAGGGGAGGGGGACAUGCGCCUGAGCCUCCUUCGCUCUCUUCCC
CUCCCUCCCUCCCUCCCCCCCCCGCCCCACUUCCUCUCUCUCUCUCUCUC
UGCGGCUGCAUGCUGAGAU
.((((......(((((.(((.(((((...((((((((((((.((.((.((((((((..(((((((((((...(((...(((....))))))....))))))))))).))).))))).)))))))).....))))))))....)))...)).)))))))).))))..... (-77.00)

Length sequence

: 169

Length match:

134