chr30_1

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

20.6

E-value:

0.0041

From sequence:

492105

To sequence:

491997

Alignments:

                 ::::::::::::::::::::::::::::::::::.....::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: CS
  RF02142     31 GCgGCUaaUGCAAGAgGCCAAAAAUGUUUuGGAG.....GAAGAAAAACAAAGGCAGGAAGUGGCgGCgGcCUGACG.GUGCGUGUGUGUCUgcGg 120   
                 G g C  a GCA  AgGC  AA  UG UU G AG      AAGAAAAA  A GG   GA  UG   GC   CU   G GUG GUGUGUGU Ug+Gg
    chr30 492105 GAGUCGGACGCAUUAGGCGUAAUGUGCUUCGCAGacuugAAAGAAAAAACAGGGGUUGAUCUGUUUGCCAGCUCGUGuGUGUGUGUGUGUGUGUGG 492010
                 334455677889999999999999***999988622222466766666555565556666666555554444433333666666666666666666 PP

                 ::::::::::::: CS
  RF02142    121 aGAAGGGAGGGAG 133   
                  G  GGG GGG G
    chr30 492009 GGGGGGGGGGGGG 491997
                 5555444433332 PP

>>

RNAfold
>chr30_1
CUUAGCACACAUCCUGAGCACCGCUGGCAGUAUCCCCCCCCCCCCCCCCA
CACACACACACACACACACGAGCUGGCAAACAGAUCAACCCCUGUUUUUU
CUUUCAAGUCUGCGAAGCACAUUACGCCUAAUGCGUCCGACUCGCGCCGG
UGCCGCAUCACGUGGUGGCAAAAGUUCG
(((.((.(((..(.(((((..(((((((.(......)...............................((((.(((.((((((........)))))).........(((.(((...))).)))((((.....))))))).)))).)))))))..)).))).)..)))))..))).... (-32.60)

Length sequence

: 178

Length match:

107