chr30_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

32.5

E-value:

2.5e-05

From sequence:

959992

To sequence:

960116

Alignments:

                                                     v    v        v   v                                      NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<--~~~~~~>>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAU*[50]*CCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 +A U  +   +AG   GAGA :GGGA:GAGG AG+G :::+GA        ::: C CU CCUC:UCCC:  CUC + U +CU +U+U U U
    chr30 959992 GAGUAAAACAAAGGC-GAGAGGGGGAUGAGGAAGUGAGAAGGAA*[41]*-UUCACUCUUCCUCAUCCCCCUCUCUCCUGCCUGUUUUGUCU 960116
                 ****99999998888.******************8866665454...8...566677*******************99999999******** PP

>>

RNAfold
>chr30_10
AAGCGGAGUAAAACAAAGGCGAGAGGGGGAUGAGGAAGUGAGAAGGAAGG
AGCGAGCUCGCACUGCUGCGGGCCACAUGCACACAGACAUUCACUCUUCC
UCAUCCCCCUCUCUCCUGCCUGUUUUGUCUGGGUAU
...((((.(((((((.(((.((((((((((((((((((((((.......(.(((.(((((((....)))))))....))).).......))))))..)))))))))))))))).)))...)))))))))))..... (-64.50)

Length sequence

: 136

Length match:

123