chr30_11

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

36.6

E-value:

1.4e-06

From sequence:

960115

To sequence:

959989

Alignments:

                                                     v                        v                                   NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<~~~~~~>---->>>>>>->>>>>>->>>>>>>->>>:.:::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGG*[43]*CcCuCCCaUGCACUGCcUCuUCCCuGGCUCC.uuucuCuccucu 132   
                 +A    + A G   ++GAGA :GGGA:GAGG AGAG ::: G   G      CC UCC::: CACU CCUC:UCCC:  CUC  +UU+ +U++ CU
    chr30 960115 GACAAAACAGGCAGGAGAGAGGGGGAUGAGGAAGAGUGAAUGUCUG*[33]*CCUUCCUUCUCACUUCCUCAUCCCCCUCUCGcCUUUGUUUUACU 959993
                 ****************************************998886...8..777999************************87999999****** PP

                      NC
                 :::: CS
  RF00690    133 uUuu 136   
                 +  +
    chr30 959992 CCGC 959989
                 **** PP

>>

RNAfold
>chr30_11
AGAAGCGGAGUAAAACAAAGGCGAGAGGGGGAUGAGGAAGUGAGAAGGAA
GGAGCGAGCUCGCACUGCUGCGGGCCACAUGCACACAGACAUUCACUCUU
CCUCAUCCCCCUCUCUCCUGCCUGUUUUGUCUGGGU
.....((((.(((((((.(((.((((((((((((((((((((((.......(.(((.(((((((....)))))))....))).).......))))))..)))))))))))))))).)))...)))))))))))... (-64.50)

Length sequence

: 136

Length match:

125