chr30_13

cmsearch-Rfam

Family :

MIR529

Id:

RF00908

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00908

Description:

not description

Score:

29.7

E-value:

0.0011

From sequence:

207282

To sequence:

207167

Alignments:

                         v  v                                                  v  v           NC
                 ::::<<--<--<<-<<<<<<<<<<<<<<-<<<<<~~~~~~>>>>>->>>>>>>>>>>>>>->>-->---->>:::: CS
  RF00908      1 acaUcaAGGCUaaAgGaaGaaGaGaGaGAGuaCa*[61]*uGuaCcCuCuCuCuuCuuCcCuuAGCUUCUugauug 131   
                   AU::AG  U+:A:GA:::AGAGAG: AG: :A      U: :C  :CUCUCU:::UC: : AG UUC ::AUU 
    chr30 207282 GAAUGGAGGUUUUAAGAGAGAGAGAGCGAGGGGA*[47]*UCUCCUUGCUCUCUCUCUCUUA-AGAUUCCUCAUUC 207167
                 *******988888899999999999999998876...9..6788999999999999999875.6778999****** PP

>>

RNAfold
>chr30_13
GAACAGAGAAUGAGGAAUCUUAAGAGAGAGAGAGCAAGGAGAGCGAUAUG
CGUGCUUUAAACUACUGUCGGUGGUGAUGCAGUACCUUGUCCCCUCGCUC
UCUCUCUCUUAAAACCUCCAUUCUCUGCUCG
((.((((((((((((....((((((((((((((((.(((.(.((((..(((.(((.....((((((...))))))...))))))..)))).)))).))))))))))))))))..))).))))))))).)). (-62.70)

Length sequence

: 131

Length match:

114