chr30_15

cmsearch-Rfam

Family :

MIR529

Id:

RF00908

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00908

Description:

not description

Score:

39.0

E-value:

2e-06

From sequence:

960109

To sequence:

959995

Alignments:

                                               v            v                                 NC
                 ::::<<--<--<<-<<<<<<<<<<<<<<-<<<<<~~~~~~>>>>>->>>>>>>>>>>>>>->>-->---->>:::: CS
  RF00908      1 acaUcaAGGCUaaAgGaaGaaGaGaGaGAGuaCa*[61]*uGuaCcCuCuCuCuuCuuCcCuuAGCUUCUugauug 131   
                 ACA ::AGG  A:AGG::GA:GAG::AGAG : A      U : C CU::CUC:UC::CC :U GC U U::+UU 
    chr30 960109 ACAGGCAGGAGAGAGGGGGAUGAGGAAGAGUGAA*[45]*UUCUCACUUCCUCAUCCCCCUCUCGCCUUUGUUUUA 959995
                 ******************************9987...8..7889******************************** PP

>>

RNAfold
>chr30_15
AGCGGAGUAAAACAAAGGCGAGAGGGGGAUGAGGAAGUGAGAAGGAAGGA
GCGAGCUCGCACUGCUGCGGGCCACAUGCACACAGACAUUCACUCUUCCU
CAUCCCCCUCUCUCCUGCCUGUUUUGUCUG
..((((.(((((((.(((.((((((((((((((((((((((.......(.(((.(((((((....)))))))....))).).......))))))..)))))))))))))))).)))...))))))))))) (-62.90)

Length sequence

: 130

Length match:

113