chr30_16

cmsearch-Rfam

Family :

TB11Cs5H1

Id:

RF01542

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01542

Description:

not description

Score:

27.3

E-value:

0.0085

From sequence:

397026

To sequence:

397130

Alignments:

                                                                                          NC
                 ::<<<<<<<<------<<<<<-----<<<<___~~~~~~>>>>--->>->>>---->>>->>>>>::::::: CS
  RF01542      1 aAgCACcCACCAACCAGCCCCUUUCugUGcugU*[ 5]*gCAcaaUGGUGGCCAAAGUGugGUGcGAGAuuU 71    
                 +AGC  :CACCAACCA C:      U:U :U U      : A:A+U   :G CAAAGUG :  GC AGAU  
    chr30 397026 CAGCUUUCACCAACCAGCUUGG---UAUCUUUU*[42]*AGAUACUUGAAGUCAAAGUGAAGAGCAAGAUGA 397130
                 ******************9776...46666655...*..77788888889********************** PP

RNAfold
>chr30_16
AGCUUUCACCAACCAGCUUGGUAUCUUUUGCGGCCGAGGCUUGCAAGUGC
GCAGCUACCGCACUCUUCGAUAGAUACUUGAAGUCAAAGUGAAGAGCAAG
AUGA
.((((((((..((((...))))......((((((....)).))))((((((.......))))))((((((.......)))))).....))).)))))....... (-26.40)

Length sequence

: 104

Length match:

103