chr30_17

cmsearch-Rfam

Family :

TB11Cs5H2

Id:

RF01543

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01543

Description:

not description

Score:

47.1

E-value:

1.6e-08

From sequence:

396837

To sequence:

396901

Alignments:

                               v        v                   v         v                NC
                 ::<<-<<<<-----<<<<<--<<<<<<_____________>>>>>>--->>>>>--->>>>.->>:::: CS
  RF01543      1 AaGCaGCAUCAGUACAGCGguggcacCucuaagaCucaaUGgugccuuCCGCUGGCGAUGC.gGCgAGA 68    
                 A+GC GCAUCAGUA AGC:++:: A::U+     C+ AA ::U ::++C:GCU GCGAUGC +GCG GA
    chr30 396837 ACGCCGCAUCAGUAGAGCGACAUCAUUUU----UCCUAAGAGUAAUGCCUGCUGGCGAUGCcAGCGCGA 396901
                 *****************************....9*99999***************************** PP

RNAfold
>chr30_17
CACGCCGCAUCAGUAGAGCGACAUCAUUUUUCCUAAGAGUAAUGCCUGCU
GGCGAUGCCAGCGCGAGU
..((((((.((....)))))....((((.(((....))).))))...((((((...)))))))))... (-18.00)

Length sequence

: 68

Length match:

63