chr30_18

cmsearch-Rfam

Family :

TB11Cs5H2

Id:

RF01543

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01543

Description:

not description

Score:

64.7

E-value:

1.4e-13

From sequence:

397220

To sequence:

397284

Alignments:

                                                                                       NC
                 ::<<-<<<<-----<<<<<--<<<<<<_____________>>>>>>--->>>>>--->>>>.->>:::: CS
  RF01543      1 AaGCaGCAUCAGUACAGCGguggcacCucuaagaCucaaUGgugccuuCCGCUGGCGAUGC.gGCgAGA 68    
                  +GC+:CAUCAGUACAGC:++::CA:CU+      ++A+UG:UG::++C:GCUGGCGAUG: +GC+AGA
    chr30 397220 CCGCUGCAUCAGUACAGCGACAUCAUCUU----UUCGAGUGGUGAUGCCUGCUGGCGAUGUcAGCAAGA 397284
                 *****************************....99999******************************* PP

>>

RNAfold
>chr30_18
CCCGCUGCAUCAGUACAGCGACAUCAUCUUUUCGAGUGGUGAUGCCUGCU
GGCGAUGUCAGCAAGAUU
...((((((((.((.(((((.(((((((.........)))))))..))))))))))).))))...... (-25.00)

Length sequence

: 68

Length match:

63