chr30_19

cmsearch-Rfam

Family :

TB11Cs5H3

Id:

RF01544

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01544

Description:

not description

Score:

68.3

E-value:

2.6e-15

From sequence:

554913

To sequence:

554981

Alignments:

                                    v                            v                      NC
                 :<<<<<<<<------<<<-<<...-<<<<<<..________>>>>>>>>>>>------>>>>>>>>:::: CS
  RF01544      1 AGcacAGuuCGAAGGCCGUcA...UucgUaC..cAUuuuauGuGcgaUgCGGUUCAAAaaCUgugCuAGA 65    
                 AGCA:AG:UCGAAGGCCGUCA   UU:GUA:  CAU U  +:UGC:AU CGGUUCAAAA:CU:UGCUAGA
    chr30 554913 AGCACAGUUCGAAGGCCGUCAuucUUUGUAUaaCAUGUAGAAUGCAAU-CGGUUCAAAAUCUCUGCUAGA 554981
                 *******************************9999999999*******.********************* PP

>>

RNAfold
>chr30_19
GCACAGUUCGAAGGCCGUCAUUCUUUGUAUAACAUGUAGAAUGCAAUCGG
UUCAAAAUCUCUGCUAGA
(((.((......(((((.((((((.(((...)))...))))))....)))))......)).))).... (-11.70)

Length sequence

: 68

Length match:

67