chr30_2

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.6

E-value:

0.0081

From sequence:

126322

To sequence:

126477

Alignments:

                        v      v   vv                  vv        v        v       vv                     vv   v   NC
                 (((((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<----<<<____>>>-->>>>->>->>>-...>>>------>>>->>>>>>>, CS
  RF02400    218 uGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCCAugcCAGUgcaCCucacugcCCuCC...CGCuUCCCCGGCCaCuuGgCA 310   
                 U:GAGA: :AG  : C:A   G :  G  G::GAGAG    :G:   A G: A U:C CC:C: U  CCUCC   ::CUU  CC: C  +U:G :A
    chr30 126322 UCGAGAGCAAG--AGCGA---GGAUGGAGGGAGAGAGCGGGGGGGAGAAGAUAUUUCGCCCCCUUGACCUCCgucUCCUUUACCUUCUGUUCGGUA 126412
                 ***********..66997...99999999********9999999*****************************99************999****** PP

                                                                         v         NC
                 ,,,<<__________________________........>>,,,,,,,,,,,,)))))))))-)) CS
  RF02400    311 CUCacuaCCCCCUCCCCUUCCCUUCUCCcCc........guacccccCuCUCUCuCuuuCuCGCa 367   
                 CUC::UAC C CUC CC  CCC  C C   C        :: CC+CCCUC  UCU: :UCUC :A
    chr30 126413 CUCGAUACACGCUCUCCCACCCGCCACGAUCcgucaucuUUCCCUCCCUCCGUCUUCCUCUCUGA 126477
                 *****************999998888777445777777777788889999999************ PP

>>

RNAfold
>chr30_2
AAUACUAACGGGAACAUGGAGCAAGUGCGAGCAAUGGGUACGUGUCCGCG
UUGGUGGGUAUCAUUAGCGAGGGGAAAAAAAGUGUACGUGCACGCAUGCC
UUGUGCUGCGGUAGACGCGAUAAACAACAUUCUGGAAGGCUGGGGAAUGA
AAGCGUUCGAGAGCAAGAGCGAGGAUGGAGGGAGAGAGCGGGGGGGAGAA
GAUAUUUCGCCCCCUUGACCUCCGUCUCCUUUACCUUCUGUUCGGUACUC
GAUACACGCUCUCCCACCCGCCACGAUCCGUCAUCUUUCCCUCCCUCCGU
CUUCCUCUCUGACGCGCACGCCGUCUAAUCCACCUUCACACUCGCAAACA
UGAUGCGGACAAAUACCAGGGACGCGAGGAAGCCAACGGCGCCAAACAUA
AGCGACACGGACACACAAACCAGCCCCAUAUACCCAAAGAACAGCACCAU
CCCGAGGAAGCCCUUUACG
........(((((...(((......(((...(..((((((.(((((((.((((((..(((((((..(((((..........((.(((.((((((((.....)))).))))))).))................(((((((.((((....((..((((.((....((((((.((((((((((((((.(((((((.((((((.......(((.......(((....))).....((((........))))..))).......)))))).))))).(((...)))......)).)))))))))))))))))).))...)).))))..))...))))))))).)))))))....)))))))..)).........((.(((..(........).))))).........)))).)))))))................))))))..)....)))))))))))(((....)))..... (-145.60)

Length sequence

: 469

Length match:

154