chr30_20

cmsearch-Rfam

Family :

TB11Cs5H3

Id:

RF01544

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01544

Description:

not description

Score:

30.6

E-value:

0.0006

From sequence:

555234

To sequence:

555305

Alignments:

                        v         v v       v v                 v v vv         v           NC
                 :<<<<<<<<------<<<-<<.....-<<<<<<..________.>>>>>>>>>>>------>>>>>>>>:::: CS
  RF01544      1 AGcacAGuuCGAAGGCCGUcA.....UucgUaC..cAUuuuau.GuGcgaUgCGGUUCAAAaaCUgugCuAGA 65    
                  GCA:AG :CGAAGG C UCA     U : UAC  CAU++UA  GUG : U  G  UCA A: CU:UGC AGA
    chr30 555234 GGCAUAGCUCGAAGGUCAUCAucguuUUACUACuuCAUCGUAGgGUGCUUU-AGGCUCACAGUCUGUGCGAGA 555305
                 **********************98888888888998999888889998888.9******************** PP

RNAfold
>chr30_20
GCAUAGCUCGAAGGUCAUCAUCGUUUUACUACUUCAUCGUAGGGUGCUUU
AGGCUCACAGUCUGUGCGAGA
((((((((.(..((((......((....((((......))))...))....))))..))).)))))).... (-13.90)

Length sequence

: 71

Length match:

70