chr30_3

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

34.0

E-value:

0.00024

From sequence:

729593

To sequence:

729713

Alignments:

                                                                  v v                v v                          NC
                 :::::::::::::<<<<<<<<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<<<--------~~~~~~>>>>>>>>>>->>>>>>>>>>>->>>>>> CS
  RF01043      1 GCGcAGugGACaCAgCuuGCAauUuacuguaCACUCUCUCCgUUUCcCUuCCcaUaAUGac*[53]*gGGaAGgGAAUcGGAGAGAGUGuacagug 143   
                 G  C  + GACAC GC:UG:           : CUCUCUC::U:UC:CU C C U     +      G G AG:GA: ::GAGAGAG :       
    chr30 729593 GACCCUACGACACUGCCUGU-----------UUCUCUCUCUCUCUCUCUCCACCUGUCAGU*[31]*GGGAAGAGAGAGAGAGAGAGAA------- 729695
                 *******************8...........555555555555566665555555444444...8..5555666666655555555555....... PP

                                        NC
                 >>>>>>>>>>>::::::::::: CS
  RF01043    144 AauUGCaaGcUUgAuuguUuuG 165   
                     :CA:GC U     +  + 
    chr30 729696 ----ACAGGCAUACACCAAAAA 729713
                 ....7***************** PP

>>

RNAfold
>chr30_3
AAAGGGGGGAUGCGUGUAAGAGACCCUACGACACUGCCUGUUUCUCUCUC
UCUCUCUCUCCACCUGUCAGUGUGGUUUGCACAAGGCCACCCCCCCGUCC
GUGGGAAGAGAGAGAGAGAGAGAAACAGGCAUACACCAAAAAACGACACG
UACAAAGUCGAAUG
....((((..(.(......))..)))).......(((((((((((((((((((((((((((((.((.....(((((((.....))))))).....))...))))..)))))))))))))))))))))))))............((((.........)))).... (-69.20)

Length sequence

: 164

Length match:

119