chr30_4

cmsearch-Rfam

Family :

MIR1023

Id:

RF01043

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01043

Description:

not description

Score:

30.5

E-value:

0.0019

From sequence:

729715

To sequence:

729595

Alignments:

                                                                    v           v                                 NC
                 :::::::::::::<<<<<<<<<<<<<<<<<-<<<<<<<<<<<-<<<<<<<<<<---~~~~~~>>>>>>>>>>->>>>>>>>>>>->>>>>>>>>>> CS
  RF01043      1 GCGcAGugGACaCAgCuuGCAauUuacuguaCACUCUCUCCgUUUCcCUuCCcaUa*[58]*gGGaAGgGAAUcGGAGAGAGUGuacagugAauUG 148   
                 G+ +  UGG     GC:UG:           : CUCUCUC::U:UC:CU:C CA        G G:AG:GA: ::GAGAGAG :           :
    chr30 729715 GUUUUUUGGUGUAUGCCUGU-----------UUCUCUCUCUCUCUCUCUUCCCACG*[36]*GUGGAGAGAGAGAGAGAGAGAA-----------A 729612
                 *******************7...........8999999999999999999988765...7..5677999999999999999988...........7 PP

                                   NC
                 >>>>>>::::::::::: CS
  RF01043    149 CaaGcUUgAuuguUuuG 165   
                 CA:GC    U GU   G
    chr30 729611 CAGGCAGUGUCGUAGGG 729595
                 ***************** PP

>>

RNAfold
>chr30_4
AGGGGGGAUGCGUGUAAGAGACCCUACGACACUGCCUGUUUCUCUCUCUC
UCUCUCUCCACCUGUCAGUGUGGUUUGCACAAGGCCACCCCCCCGUCCGU
GGGAAGAGAGAGAGAGAGAGAAACAGGCAUACACCAAAAAACGACACGUA
CAAAGUCGAAUGUA
..((((..(.(......))..)))).......(((((((((((((((((((((((((((((.((.....(((((((.....))))))).....))...))))..)))))))))))))))))))))))))............((((.........))))...... (-69.20)

Length sequence

: 164

Length match:

119