chr30_5

cmsearch-Rfam

Family :

MIR1027

Id:

RF00925

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00925

Description:

not description

Score:

30.5

E-value:

0.0025

From sequence:

729585

To sequence:

729720

Alignments:

                                v    v   v                          vv        vv                         v   v    NC
                 :::::::::::::::<<<<<<--<<-<<<<<<-<<<<-<<<<-<<<<<<<<<<<~~~~~~>>>>>>>>>>>->>>>->>>>->>>>>>>>-->>>> CS
  RF00925      1 GUGCAAGAGCAGAUACuuaaGUCGaAGaGCauCuuuCUauCuUCuCuuCCaauC*[35]*GauuGGaaGaGCaGauCGaaaAauGCuCuCACCuua 125   
                 GUG AAGAG    UAC    G C:  G::::U U:UCU:UCU CUCU::C:  C      G +:G::AGAG AGA: GA:AAA::::C :AC    
    chr30 729585 GUGUAAGAGACCCUAC----GACACUGCCUGUUUCUCUCUCU-CUCUCUCU--C*[43]*GGAAGAGAGAG-AGAGAGAGAAACAGGCAUAC---- 729705
                 ************9994....3577777777777777776666.44444443..3...9..33445555555.66666777777777777777.... PP

                  v                NC
                 >>::::::::::::::: CS
  RF00925    126 aGGAGAGACAGCGACUC 142   
                      A A A CGAC C
    chr30 729706 --ACCAAAAAACGACAC 729720
                 ..5578999******** PP

RNAfold
>chr30_5
GCGUGUAAGAGACCCUACGACACUGCCUGUUUCUCUCUCUCUCUCUCUCC
ACCUGUCAGUGUGGUUUGCACAAGGCCACCCCCCCGUCCGUGGGAAGAGA
GAGAGAGAGAGAAACAGGCAUACACCAAAAAACGACACGUA
((((((..(..............(((((((((((((((((((((((((((((.((.....(((((((.....))))))).....))...))))..)))))))))))))))))))))))))............).)))))). (-64.60)

Length sequence

: 141

Length match:

134