chr30_6

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

31.6

E-value:

0.0034

From sequence:

207297

To sequence:

207151

Alignments:

                                                                                                                  NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-~~~~~~->>>>>>>>>>>->>>>>>>>>>--..>>>-.>>>->>>>>: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaA*[75]*CuCCCAUuCCuAucguUCucaggug..CUCC.uuCCucuuCC 162   
                 G  + G  GA::A ::AA  GAGGU::U:AGA::G+ AG::: :GG        C CC: :::CU UC::UCU:A::    CUC  U::CU::UCC
    chr30 207297 GCGGCGGCGAGCAGAGAAUGGAGGUUUUAAGAGAGAGAGAGCGAGGGG*[49]*CUCCUUGCUCUCUCUCUCUUAAGAUucCUCAuUCUCUGUUCC 207159
                 *************999999********************999999986...9..689999999************995434999537789****** PP

                          NC
                 :::::::: CS
  RF01911    163 UUuuaguU 170   
                   UU ++U
    chr30 207158 CCUUCUCU 207151
                 ******** PP

>>

RNAfold
>chr30_6
AAGGAGUGACAAGAGAAGGGGAACAGAGAAUGAGGAAUCUUAAGAGAGAG
AGAGCAAGGAGAGCGAUAUGCGUGCUUUAAACUACUGUCGGUGGUGAUGC
AGUACCUUGUCCCCUCGCUCUCUCUCUCUUAAAACCUCCAUUCUCUGCUC
GCCGCCGCUCUCCUUCCCCA
..((((.((...(((..((.((.((((((((((((....((((((((((((((((.(((.(.((((..(((.(((.....((((((...))))))...))))))..)))).)))).))))))))))))))))..))).))))))))).)).))....))))).))))... (-75.30)

Length sequence

: 170

Length match:

145