chr30_9

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.2

E-value:

0.0044

From sequence:

647579

To sequence:

647484

Alignments:

                                        v    vv v      v         v      v vv    v                         NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-~~~~~~>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGa*[54]*CaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 ++    ++AUGA A++GAGA AG G :G  G AG+GCA G       C UGC CU C  C: C CU  CUCCU U UC CC++UU  +
    chr30 647579 GGGAAAAUAUGAAAGAGAGAGAGAGUGGCAGCAGUGCACGC*[14]*CCUGCCCUCCCCCCACCCUCCCUCCUCUGUCCCCCUUUCCC 647484
                 ***************************************94...6..9**************************************** PP

>>

RNAfold
>chr30_9
AGUAGAAGAGCACGGGCAGGGGAAAGGGGGACAGAGGAGGGAGGGUGGGG
GGAGGGCAGGAAAAGUAGCACGGUGCGUGCACUGCUGCCACUCUCUCUCU
CUUUCAUAUUUUCCCCCUUGCUUUUGCUUGUGGUG
........(.((((((((((((.((((((((.(((...(((((((.(((((((((((((.(...((.(((((...)))))))).))))).)))))))))))))))...))))))))))).)))))))))))).). (-67.70)

Length sequence

: 135

Length match:

94