chr31_1

cmsearch-Rfam

Family :

5_8S_rRNA

Id:

RF00002

Type:

Gene; rRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0003735 structural constituent of ribosomeRF00002

Description:

5.8S ribosomal RNA (5.8S rRNA) is a component of the large subunit of the eukaryotic ribosome.
It is transcribed by RNA polymerase I as part of the 45S precursor that also
contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved
in ribosome translocation [2]. It is also known to form covalent linkage to the p53
tumour suppressor protein [3]. 5.8S rRNA is also found in archaea.

Score:

29.7

E-value:

0.00011

From sequence:

267569

To sequence:

267449

Alignments:

                                                           v                                                      NC
                 :::::::::::::::::::::::::::::::::::::::((((<<<<______>>>>,,,,,,,<<<----<<____>>---------->>>,,,, CS
  RF00002      1 AACuuUuAgCGAUGGAUguCUuGGCUCccGuaUCGAUGAAgaaCGCaGCaAAauGCGAUAcGUaguGUGAAuuGCAGaaUuccgUgAAUCacCGAA 96    
                  AC U  AG G  G  UG CUUGGCUC++ U  CGA  AA:: CGC:GCAAAA:GCG UA   A::G GA U:GCAG:A  CCG     C:: G  
    chr31 267569 CACGUGAAGUGCGGACUGACUUGGCUCUU-UGACGACUAAGGACGCCGCAAAAGGCGGUAGAGAACGAGAGUGGCAGCA--CCGGUGUGCGUGGG- 267478
                 ***********99999**********987.678**********************************************..67777789***986. PP

                   v                                    NC
                 ,,)))),,,~~~~~~~~~~~:::::::::::::::::: CS
  RF00002     97 ucuucGAAC*[9]**[22]*AUgccUGuuugAGUGUCa 154   
                  C ::GAA             + C   ++U AGUG C+
    chr31 267477 -CGUUGAA-*[2]**[ 4]*-CAC-CUCCUUAGUGGCU 267449
                 .6899*98...9.....6...333.347999******* PP

RNAfold
>chr31_1
CUAUGAAAAAAGUGGUAGCCACUAAGGAGGUGCACGACUUCAACGCCCAC
GCACACCGGUGCUGCCACUCUCGUUCUCUACCGCCUUUUGCGGCGUCCUU
AGUCGUCAAAGAGCCAAGUCAGUCCGCACUUCACGUGCUGAAACGUCUCC
ACGG
....(((...(((((((((.(((..((..((((.................)))).))))))))))))))....)))......((((((.(((((.......))))).)))).))....(((((.((.......)).)))))..(((....))). (-40.30)

Length sequence

: 154

Length match:

119