chr31_12

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

58.9

E-value:

2.3e-11

From sequence:

582440

To sequence:

582510

Alignments:

                            v         v                                                  NC
                 (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaaggcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 G:::A::U+:: :AGUGGUA: :: : :G:CU+  A :C: :AGGC:CGGGUUCGA UCCCG:::U:::CA
    chr31 582440 GCGCAGUUGGUCUAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGACUGCGCA 582510
                 *********************************************************************** PP

>>

RNAfold
>chr31_12
CGCAGUUGGUCUAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGG
UUCGAUUCCCGGACUGCGCA
((((((...((((....))))......((((.((....)).))))(((((.......))))))))))).. (-28.70)

Length sequence

: 70

Length match:

69