chr31_13

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

55.9

E-value:

1.6e-10

From sequence:

582631

To sequence:

582560

Alignments:

                            v          v                                                  NC
                 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaaggcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 :::GAU:U+G: :AGUGG  A: :C+:::G:CU + A :C:::AG+C:CGGGUUCGA  CCCG::AUC:::A
    chr31 582631 UCCGAUGUGGUAUAGUGGAuAGAACAAGCGGCUCUCACCCGCUAGACCCGGGUUCGAUCCCCGGCAUCGGAA 582560
                 ****************7777**************************************************** PP

>>

RNAfold
>chr31_13
UCCGAUGCCGGGGAUCGAACCCGGGUCUAGCGGGUGAGAGCCGCUUGUUC
UAUCCACUAUACCACAUCGGA
((((((((((((.......)))))((.(((.((((.(((((.....))))))))).))).))..))))))) (-30.50)

Length sequence

: 71

Length match:

70