chr31_15

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

62.2

E-value:

2.8e-12

From sequence:

64244

To sequence:

64164

Alignments:

                            v        v                                                             NC
                (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,<<<<<_______>>>>>))))))): CS
  RF00005     1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaag..........gcgcgGGUUCgAaUCCcgcuaucucCa 71   
                G:::::AUA:C: AGUGGU A :G:G:::GACU  AAAUC:::+           GCGC:GGUUCGAAUCC:GCU:::::C+
    chr31 64244 GUCACCAUACCCAAGUGGUuACGGGGGUUGACUCGAAAUCAACU-gcgaucucgcGCGCAGGUUCGAAUCCUGCUGGUGACG 64164
                ****************9999************************.8********95************************** PP

>>

RNAfold
>chr31_15
GUCACCAGCAGGAUUCGAACCUGCGCGCGAGAUCGCAGUUGAUUUCGAGU
CAACCCCCGUAACCACUUGGGUAUGGUGAC
((((((((((((.......)))))((.(((((((......))))))).))..((((..((....))..)))).))))))) (-30.20)

Length sequence

: 80

Length match:

79