chr31_16

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

38.3

E-value:

5.2e-05

From sequence:

1384347

To sequence:

1384268

Alignments:

                         v      vv      vv                                                   v        NC
                  (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,<<~~~~~~>>,,<<<<_______>>>>))))))))) CS
  RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaGgg*[14]*ccgGggGGUUCGAUUCCcccgccccccC 91     
                  G::::::    C::   UGGU   ::G::C:G:CU  AAA:C:G::G:G      C: G :GGUUCGA UCC:   ::::::C
    chr31 1384347 GUCACCAU--ACCCAAGUGGUUACGGGGACUGACUAGAAAUCAGUUGCG*[ 6]*CGCGUAGGUUCGAAUCCUG-CUGGUGAC 1384268
                  *****996..8************************************98...3..7789***************.699***** PP

>>

RNAfold
>chr31_16
AAAGCGUCACCAGCAGGAUUCGAACCUACGCGCGAGAUCGCAACUGAUUU
CUAGUCAGUCCCCGUAACCACUUGGGUAUGGUGACUUCUGG
.....((((((((((((.......)))..))(((....))).(((((((...))))))).((((........))))..)))))))...... (-25.00)

Length sequence

: 91

Length match:

78