chr31_17

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

39.1

E-value:

3.2e-05

From sequence:

64244

To sequence:

64165

Alignments:

                       v      vv      vv                                                   v        NC
                (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,<<~~~~~~>>,,<<<<_______>>>>))))))))) CS
  RF01852     1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaGgg*[14]*ccgGggGGUUCGAUUCCcccgccccccC 91   
                G::::::    C::   UGGU   ::G::::G:CU  AAA:C::::G:G      C: G::GGUUCGA UCC::  ::::::C
    chr31 64244 GUCACCAU--ACCCAAGUGGUUACGGGGGUUGACUCGAAAUCAACUGCG*[ 6]*CGCGCAGGUUCGAAUCCUG-CUGGUGAC 64165
                *****996..8************************************98...3..778****************.699***** PP

>>

RNAfold
>chr31_17
AAAUCGUCACCAGCAGGAUUCGAACCUGCGCGCGAGAUCGCAGUUGAUUU
CGAGUCAACCCCCGUAACCACUUGGGUAUGGUGACCACGGU
.....((((((((((((.......)))))((.(((((((......))))))).))..((((..((....))..)))).)))))))...... (-30.90)

Length sequence

: 91

Length match:

78