chr31_3

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

22.3

E-value:

0.0068

From sequence:

405517

To sequence:

405656

Alignments:

                      v       v       v     v  v                                                                  NC
                 :::::{{{{{-{{{--{{..{{--{{{{[[[[[[[[--[[[[[[[,,,,,,,,,,,,,,,,~~~~~~~~~~~~~~~~~~~,,,,]]]]]]]--]]] CS
  RF01390      1 GUUUugcggCauccUCuG..CcCuGGugGCcgcugCUCCgGCaGCAGuaCUGCUUUGCGCc*[17]**[40]**[101]*cGAcGCuGCcGccGca 233   
                 GU  U ::G: :C   UG  C  +GG: :  G :GC CCGGC                                             GCCG++GC:
    chr31 405517 GUGCUGAUGGUGCUGUUGgcCUGAGGCGCUCGUGGCACCGGCU------------------*[15]**[ 8]**[ 18]*------GGCCGAUGCC 405610
                 *************98888555568*****************96.....................8.....*......9........7********* PP

                   v                v   v     v       v         NC
                 ]]]]],,,,<<<__>>>,,}}}}}}}}--}}}-}}}}}:::::::: CS
  RF01390    234 gcgGCuGACgcaCCugcAucaCCgGCacuggagGccgccUgugUUU 279   
                  C  : G CGCA CUGCA+ :CC GCA U G:G:C::  UGU  U 
    chr31 405611 GCUGGAGGCGCAUCUGCAAAGCCUGCAGUCGCGCCAUGAUGUACUC 405656
                 ********************************************** PP

RNAfold
>chr31_3
UCUGGGCCUCAGGGUAGAUGAUGUAGGCGCCAGGGGGUGCUGAGCGUCUG
CACUGUGGGUACAUGAUCUGUGCUGAUGGUGCUGUUGGCCUGAGGCGCUC
GUGGCACCGGCUCAGUAAACGGUGCGGGCGGCGGUAGUGCGUUGAAGCGG
AGUGGCCGAUGCCGCUGGAGGCGCAUCUGCAAAGCCUGCAGUCGCGCCAU
GAUGUACUCGUCGUCCUUCACGGUUGUGGCAAUACAGCCACCAGAGCUCG
AAGUUCUCAUAUUGCCGCUUUGCUGUGCC
...(.((((((((.(((..(((((.((((((....))))))..))))).(((((((.((((((.....)))))).)))))))..))).)))))))).).....((((((..........))))))((((((((..(((((((((......((((((....))))))...(((((..(((((.....)))))..))))).)))))))))))))))))..((((((.(((((((((........((((((...))))))..)))))))))...)))))).. (-126.60)

Length sequence

: 279

Length match:

138