chr31_8

cmsearch-Rfam

Family :

sn2343

Id:

RF01172

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01172

Description:

not description

Score:

30.8

E-value:

0.00026

From sequence:

48279

To sequence:

48203

Alignments:

                                                                                           NC
                <<<<____________________________________________________________~~~~~~>>>> CS
  RF01172     1 cGGCUgUGAUGAUUUCCUAUUGCCGUUUACCCGUCUGAGGAAAACCGUGCUUGAuacuuuUgGa*[10]*GCCg 78   
                CGG  GU AUGAU U C  UUGCCGUU ACCCG CUGAG A    CGUG  UGA  + UUU GA       CCG
    chr31 48279 CGGACGUCAUGAUGUACGCUUGCCGUUAACCCGACUGAGUAGGCACGUGUGUGACCAGUUUCGA*[ 9]*UCCG 48203
                ******************************************************9999998876...9..**** PP

RNAfold
>chr31_8
CGGAGAGAAGGAAUCGAAACUGGUCACACACGUGCCUACUCAGUCGGGUU
AACGGCAAGCGUACAUCAUGACGUCCGG
(((((((.(((.((((....))))(((....)))))).))).(((((((..(((.....)))..))).)))).)))). (-16.60)

Length sequence

: 78

Length match:

75