chr32_12

cmsearch-Rfam

Family :

mir-357

Id:

RF00791

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00791

Description:

not description

Score:

33.5

E-value:

0.00011

From sequence:

571478

To sequence:

571581

Alignments:

                                              v              vvv                vvv              v                NC
                 :<<<--<<<<<<<---<<<<<<<<-<<<-<<<<<<<<-<<<<<<<<<<______________>>>>>>>>>>>>>>->>>>->>>->>>>>>>>-- CS
  RF00791      1 acgcuucugcacuaACcaGCGaAucCCuGcAAcaCuGuGCAUcUaCAUguaauaaaaaaAuAAUGuAgAUGCCaGuCgUUgcaGGAaUuCGCugAa 96    
                  :GC+ ::GCAC: A C::: A:U+CC:  ::: C:  G:AU:U +  G+AA+A+++A+AUA    A:AU:C :G C:::  :GGAA:U :::G  
    chr32 571478 GAGCACUCGCACCGA-CUUGCAUUUCCACACGAUCCCCGUAUGUCUC-GAAAAAUUGAUAUA---CACAUACGGGGCUCGCGUGGAAAUGCAAGUC 571568
                 *****9*******9*.6666666666666666799999999999654.45555666666666...5999999999997666666666666666688 PP

                                  NC
                 >>>>>>>----->>>: CS
  RF00791     97 agugcaguuAAAgcgc 112   
                 :GUGC::     GC:C
    chr32 571569 GGUGCGAG---UGCUC 571581
                 9****995...6**** PP

>>

RNAfold
>chr32_12
UCAGAGCACUCGCACCGACUUGCAUUUCCACACGAUCCCCGUAUGUCUCG
AAAAAUUGAUAUACACAUACGGGGCUCGCGUGGAAAUGCAAGUCGGUGCG
AGUGCUCUGAG
(((((((((((((((((((((((((((((((.(((.((((((((((.((((....)))).....)))))))))).))).))))))))))))))))))))))))))))))). (-86.60)

Length sequence

: 111

Length match:

102