chr32_13

cmsearch-Rfam

Family :

mir-357

Id:

RF00791

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00791

Description:

not description

Score:

30.7

E-value:

0.00073

From sequence:

571581

To sequence:

571478

Alignments:

                                                 vv    v       vv             vv       v   v v                    NC
                 :<<<--<<<<<<<---<<<<<<<<-<<<-<<<<<<<<-<<<<<<<<<<________~~~~~>>>>>>>>>>>>>>->>>>->>>->>>>>>>>.-- CS
  RF00791      1 acgcuucugcacuaACcaGCGaAucCCuGcAAcaCuGuGCAUcUaCAUguaauaaa*[6]*AUGuAgAUGCCaGuCgUUgcaGGAaUuCGCug.Aa 96    
                  :GC+ ::GCAC: AC::GC:::UCC :GC:A  C:   C:U:U:: U UA  AA+       ::A:A:G  :G   U:G : G A:::GC::   
    chr32 571581 GAGCACUCGCACCGACUUGCAUUUCCACGCGAG-CC--CCGUAUGUGUAUAUCAAU*[8]*--ACAUACG--GGG-AUCGUGUGGAAAUGCAAgUC 571491
                 999998888888888666666666666666666.22..233333333344444444..4....3333333..343.56666666666666666256 PP

                                  NC
                 >>>>>>>----->>>: CS
  RF00791     97 agugcaguuAAAgcgc 112   
                 :GUGC::     GC:C
    chr32 571490 GGUGCGAG---UGCUC 571478
                 88888885...59999 PP

RNAfold
>chr32_13
UCAGAGCACUCGCACCGACUUGCAUUUCCACACGAUCCCCGUAUGUCUCG
AAAAAUUGAUAUACACAUACGGGGCUCGCGUGGAAAUGCAAGUCGGUGCG
AGUGCUCUGAG
(((((((((((((((((((((((((((((((.(((.((((((((((.((((....)))).....)))))))))).))).))))))))))))))))))))))))))))))). (-86.60)

Length sequence

: 111

Length match:

102