chr32_14

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.0

E-value:

0.0053

From sequence:

804673

To sequence:

804800

Alignments:

                                  v                                            v                    NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<....-~~~~~~->>>>>>->>>>>>>->>>:.:::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG....a*[65]*ACUGCcUCuUCCCuGGCUCC.uuucuCuccucuuUuu 136   
                 + +U      GAGA++G GA :GGG A AGG :G            C: CCUCU CCC: GC CC +U CUCU++++ +  U
    chr32 804673 GCAUAAGAGAGAGAGAGAGAGGGGGGAAAGGGGGgaau-*[53]*GCCCCCUCUUCCCCCGCCCCuCUACUCUUUCUGCACU 804800
                 ********************************995555....7..39******************99*************** PP

>>

RNAfold
>chr32_14
AGAGCAUAAGAGAGAGAGAGAGAGGGGGGAAAGGGGGGAAUAGGCGGCGA
GGCCCCUCACAUACACGCUCGUCCACCCGCCGUCCACGCACCCCGCCCCC
UCUUCCCCCGCCCCUCUACUCUUUCUGCACUGUUC
.(((((..((((((((((((.(..(((((((.((((((....(((((((.((.......................)))))))))..((.....)))))))).)))))))..).)))).))))))))....))))) (-60.00)

Length sequence

: 135

Length match:

126