chr32_15

cmsearch-Rfam

Family :

MIR529

Id:

RF00908

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00908

Description:

not description

Score:

28.3

E-value:

0.0027

From sequence:

1414704

To sequence:

1414802

Alignments:

                                    v          v                                         v          v            NC
                  ::::<<--<--<<-<<<<<<<<<<<<<<-<<<<<<<<<____...____________~~~~~~>>>>>>>>>->>>>>>>>>>>>>>->>-->- CS
  RF00908       1 acaUcaAGGCUaaAgGaaGaaGaGaGaGAGuaCaGCcuUaGu...UcAGaUcacAuA*[37]*agGCuGuaCcCuCuCuCuuCuuCcCuuAGCU 122    
                   +A ::A G  A:AGG:A  AG:GAG GA+:A::G::: AG    U  G UCA   A      :::C::U:  C CUC:CU  U:CCC:U  CU
    chr32 1414704 CUAAGGACG--AGAGGGACGAGGGAGGGAUCAUGGGUGCAGAugcUGUGGUCAGUCA*[ 8]*CGCCCAUG-UCUCUCCCUU-UUCCCCU--CU 1414793
                  *********..***************************9998555445555555555...6..********.8********9.7777788..** PP

                            NC
                  --->>:::: CS
  RF00908     123 UCUugauug 131    
                  U U::A++ 
    chr32 1414794 UUUCCAAGC 1414802
                  ********* PP

>>

RNAfold
>chr32_15
AAAGGAGCGUCAAAGCUAAGGACGAGAGGGACGAGGGAGGGAUCAUGGGU
GCAGAUGCUGUGGUCAGUCAUGGCUACGCGCCCAUGUCUCUCCCUUUUCC
CCUCUUUUCCAAGCCUCUCCCCCGUCUCUC
...((((.(.....(((..(((.((((((((.((((((((((.(((((((((....((((((......))))))...))))))))))))))))))).).))))))).))).)))).)))).......... (-63.60)

Length sequence

: 130

Length match:

97