chr32_16

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

27.5

E-value:

0.0048

From sequence:

590280

To sequence:

590366

Alignments:

                                                                                                                  NC
                 ::::::::::<<<<<<<<-<<<<<<<<<<<<--<<------<<<<<_~~~~~>>>>>------>>-->>>>>>>>>>>>->>>>>>>>:::::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAGCACGcUuGUuaGcaucCauGu*[7]*CauGgcuGugUACaugCGUGCUcuCUcUCGuuGUCAuucaauuu 98    
                 C+U       : ACA::GAGAGAGAG       ::   CA :CA::      ::UG: UGUGU::       CUCUCUCUC::UGU :   A   +
    chr32 590280 CUUCCAGCUAGCACAGAGAGAGAGAG-------ACACACACACACAA*[6]*UGUGUGUGUGUGU-------CUCUCUCUCUCUGUGCCCAAUGAA 590362
                 *************************9.......34444444444443..3..5555554444433.......9*********************** PP

                      NC
                 :::: CS
  RF00714     99 uaua 102   
                 +  A
    chr32 590363 CGAA 590366
                 **** PP

>>

RNAfold
>chr32_16
UCUUCCUCUUCCAGCUAGCACAGAGAGAGAGAGACACACACACACAAACG
CGAUGUGUGUGUGUGUCUCUCUCUCUCUGUGCCCAAUGAACGAAACGAGC
CG
.....((((((((....(((((((((((((((((((((((((((((.......)))))))))))))))))))))))))))))....))...)))..)))... (-59.40)

Length sequence

: 102

Length match:

85