chr32_17

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

32.6

E-value:

0.00014

From sequence:

590364

To sequence:

590278

Alignments:

                                                                                                                  NC
                 ::::::::::<<<<<<<<-<<<<<<<<<<<<--<<------<<<<<________>>>>>------>>-->>>>>>>>>>>>->>>>>>>>:::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAGCACGcUuGUuaGcaucCauGuaAaGuaaCauGgcuGugUACaugCGUGCUcuCUcUCGuuGUCAuucaau 96    
                 C U   U+G : ACA::GAGAGAGAG       ::   CA :CA::U   GU  ::UG: UGUGU::       CUCUCUCUC::UGU :U+    
    chr32 590364 CGUUCAUUGGGCACAGAGAGAGAGAG-------ACACACACACACAUCGCGU-UUGUGUGUGUGUGU-------CUCUCUCUCUCUGUGCUAGCUG 590284
                 *************************9.......5555555566666666666.56666655555544.......9********************* PP

                        NC
                 :::::: CS
  RF00714     97 uuuaua 102   
                  +    
    chr32 590283 GAAGAG 590278
                 ****** PP

>>

RNAfold
>chr32_17
CAUCUUCCUCUUCCAGCUAGCACAGAGAGAGAGAGACACACACACACAAA
CGCGAUGUGUGUGUGUGUCUCUCUCUCUCUGUGCCCAAUGAACGAAACGA
GC
.......((((((((....(((((((((((((((((((((((((((((.......)))))))))))))))))))))))))))))....))...)))..))). (-59.40)

Length sequence

: 102

Length match:

85