chr32_2

cmsearch-Rfam

Family :

CrcZ

Id:

RF01675

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0045013 carbon catabolite repression of transcription

Description:

not description

Score:

21.8

E-value:

0.0087

From sequence:

1296608

To sequence:

1296214

Alignments:

                                                                                                                 NC
                  ::::::::::::::::::::::::::::::::::::::::::::::::<<-<<<<______~~~~~~~>>>>->>,,,~~~~~~~,,,,,,,,, CS
  RF01675       1 ACAAcAAaAAuAAcAAGCAgugaaaaacacAAUAAaAACAAgACGuAaCGaCUCugaCAuA*[ 16]*aGAGGCGcAG*[135]*aAAUaCGUU 231    
                   CAA AAAAA AA+AA C ++   A A+A AA  AAAACAAGA G+AAC:A UC:+A A A       :GA G:G+ G       A  UACGUU
    chr32 1296608 GCAAAAAAAAAAAAAAACUAA---AUAAAUAACUAAAACAAGAGGAAACAAAUCCAAAAGA*[116]*GGAUGUGUUG*[  1]*AUGUACGUU 1296415

                                                           v  vvv                     vvv                     v  NC
                  ,,,,,,,,<<~~~~~~>>,,,,,,,,,,,,,,,,,,,,((((((<<<.<__________________>>>>,,,,,,,,,,,,,,,,,,<<<<- CS
  RF01675     232 UGCUCUUGgC*[13]*GccgcccaaAAacaacugUaaaggGccggGg.caauCAAcAAaAACAAcAagcCcaacaucAuAAuAAaAAgAgcgca 331    
                    C CUU G:      :C+GCC AAA  + A +G  A ::G :G+G+ C A   ACAAAAA A  AAG   AA+A+CA A  AAAAA+A::: A
    chr32 1296414 --CACUUAGU*[28]*ACUGCCGAAAGCAGAGAGAGAGAGGUGGAGAgCGAGAGACAAAAAAAGAAAG---AAAAACACACAAAAAAAAAGGUA 1296304

                                       v         v                      NC
                  ------------<~~~~~~>->>>>,,,,)))))):::::::::::::::::: CS
  RF01675     332 caaAcauAcUUug*[20]*cagcgcuuuCcggCccucuguuuuuccugcuuuu 398    
                  CAA ++U CU +:      :A :::UU CC: C:: +UG  + +  UGC  +U
    chr32 1296303 CAACACUUCUAAC*[43]*GACUCUUUCCCCUCUUCUUGCGACCGUUGCCGAU 1296214

RNAfold
>chr32_2
AAUCGGCAACGGUCGCAAGAAGAGGGGAAAGAGUCGAUAGAGCCAUUACA
CACACGCACCAUCAGCAAGGGUGGACGUGUUAGAAGUGUUGUACCUUUUU
UUUUGUGUGUUUUUCUUUCUUUUUUUGUCUCUCGCUCUCCACCUCUCUCU
CUCUGCUUUCGGCAGUACGUCGGUAAGAGCGGAGCCGAAGAUAAACUAAG
UGAACGUACAUCCAACACAUCCACUACAUCCACCACCACCAUAAAGAGGC
GAAGGAUACAAGUCCACAUACGGAGUUUACGCGUGUGUCCGUGUCUAUGU
AGUUGUGUGCUAGACCUCUGCGUCGGUUUCUUCUGUUCUCUUUUGGAUUU
GUUUCCUCUUGUUUUAGUUAUUUAUUUAGUUUUUUUUUUUUUUUGCAA
.((((....)))).(((((((((((((((((....((((((..............((.......))...((((((.(((...((.((((((............(((((((((..(((....((((((.(((.((((((..(((.........(((((...)))))......))).))))))))).))))))......))).)))))))))..)))))).))...))).))))))...........(((((((((((.(((((((((.(((((((...(((....))))))))))..((((((..((.......))..))))))(((......)))........))))))))).)))).))))))).....))))))...))))))))))))))))).. (-101.50)

Length sequence

: 398

Length match:

393