chr32_21

cmsearch-Rfam

Family :

rli61

Id:

RF01485

Type:

Cis-reg;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

32.1

E-value:

0.0081

From sequence:

590348

To sequence:

590249

Alignments:

                                                                                     v      v      NC
                 :<-<<<<<----<<<<<-<<<<<<_______>>>>>>->>>>>--->>>>>->--------------<<~~~~~~>>:::: CS
  RF01485      1 CGUGaaauAAAUCaCaaACaaauacCCCCUUuauuuGAuuGuGUGAauuuCUCCUUUUGAUUGCGCUGu*[31]*aCGUUA 106   
                  G GA:A:A A CACA:ACA:A:A C C UUU:U:UG :UGUGU  :U:UCUC    UG     GCUG        CGU A
    chr32 590348 AGAGAGAGAGA-CACACACACACAUCGCGUUUGUGUGUGUGUGUCUCUCUCUCUC--UGUGCUAGCUGG*[28]*ACGUAA 590249
                 ********988.********************************55555555555..555555556664...6..57**** PP

RNAfold
>chr32_21
GAUUACGUCAUAGAGCGAGUUGCCCAUCUUCCUCUUCCAGCUAGCACAGA
GAGAGAGAGACACACACACACAAACGCGAUGUGUGUGUGUGUCUCUCUCU
CUCUG
...........((((.(((........))).))))...........((((((((((((((((((((((((((.......)))))))))))))))))))))))))) (-54.60)

Length sequence

: 105

Length match:

98