chr33_1

cmsearch-Rfam

Family :

BjrC80

Id:

RF02354

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

40.0

E-value:

5.4e-05

From sequence:

401388

To sequence:

401199

Alignments:

                                   v                v                                                             NC
                 ::::::::<<<<<<<-<<<<______________>>>>->>>>>>>,,,,,<<<<<<<<<-<~~~~~~>>>>>>>>>><<-~~~~~~>><<<<<<< CS
  RF02354      1 aaaugGaaggcgccgccggcaauuGUcGCCCCCagccgacggcgccuUCCgGGGGgcGgguc*[ 5]*gccCgcCCCCgcu*[44]*gcGGGcGgu 133   
                  AA+ GAAGG   ::CC           CCCCCA + G ::   CCUUCCGGGGGG:GG: :      ::CC:CCCCC::       ::GGG:GG:
    chr33 401388 CAAAAGAAGGGGGGACCU----------CCCCCA-AGGUUCUUUCCUUCCGGGGGGGGGGGG*[58]*CUCCCCCCCCCUC*[30]*AGGGGGGGG 401228
                 ***********9998653..........455554.56789999*****99999999999966...9..4555555555553...9..789999999 PP

                                               NC
                 <<<<<______>>>>>>>>>>>>:::::: CS
  RF02354    134 GgggucCCCCAgcccCacCgCCCgcuuUu 162   
                 GGGG:     A:CCCC:CC:CCC +UUUU
    chr33 401227 GGGGGAAAAAACCCCCCCCCCCCCUUUUU 401199
                 999999999******************** PP

RNAfold
>chr33_1
AAAAGGGGGGGGGGGGGUUUUUUCCCCCCCCCCCCCUUUUCGGGAAACUU
UUUCGGGCUUUUUUUUAGAGGGGGGGGGAGGCCCCUUCCCAAAAGAGGUU
CCUCUCUCCCCUAUAAAAAGCCCGAAAAAUAUUUCUCCCCCCCCCCCCCC
GGAAGGAAAGAACCUUGGGGGAGGUCCCCCCUUCUUUUG
(((((((((((((((((......))))))))))))))))).((((((.(((((((((((((((......((((((((((((..((((.......))))..))))))))))))..)))))))))))))))..)))))).....((.((((((..(((......))))))))).))............... (-106.60)

Length sequence

: 189

Length match:

188